cwlVersion: v1.2

$namespaces:
  s: https://schema.org/
  cwltool: http://commonwl.org/cwltool#

$graph:

- class: Workflow
  id: openoil_pipeline
  doc: This pipeline runs an oil spill simulation with openoil, creates an animation of the simulation and stores it in S3.
  inputs:
    lat:
      type: float
      doc: The latitude of the study area
      label: openoil
    lon:
      type: float
      doc: The longitude of the study area
      label: openoil
    time:
      type: string
      doc: The start time of the simulation
      label: openoil
    oiltype:
      type: string
      doc: The type of the oil to run the simulation
      label: openoil
    duration:
      type: int
      doc: The simulation duration
      label: openoil
    username:
      type: string
      doc: The CMEMS username
      label: cmems_credentials
    password:
      type: string
      doc: The CMEMS password
      label: cmems_credentials
    # animation:
    #   default: 1
    #   type: int?
    #   # type: boolean?
    #   doc: Run (or not) the animation step
    #   label: openoil
    # endpoint:
    #   type: string?
    #   doc: S3 storage endpoint
    #   label: s3storage
    # region:
    #   type: string?
    #   doc: S3 storage region
    #   label: s3storage
    # access_key:
    #   type: string?
    #   doc: S3 storage access_key
    #   label: s3storage
    # secret_key:
    #   type: string?
    #   doc: S3 storage secret_key
    #   label: s3storage
    # session_token:
    #   type: string?
    #   doc: S3 storage region
    #   label: s3storage
    # bucket:
    #   type: string?
    #   doc: S3 storage bucket
    #   label: s3storage
    # base_path:
    #   type: string?
    #   doc: S3 storage final directory name
    #   default: "openoil_pipeline"
    #   label: s3storage

  steps:
    step_simulation:
      run: 'https://pipe-drive.inesctec.pt/application-packages/tools/openoil-simulation-duth/openoil_simulation_duth_0_1_0.cwl#openoil_simulation'
      in:
        lat: lat
        lon: lon
        time: time
        oiltype: oiltype
        duration: duration
        username: username
        password: password
      out:
      - simulation
      - metadata
    step_animation:
      run: 'https://pipe-drive.inesctec.pt/application-packages/tools/openoil-animation-duth/openoil_animation_duth_0_1_0.cwl#openoil_animation'
      # when: $(inputs.animation == true || inputs.animation == "true")
      in:
        file: step_simulation/simulation
        # animation: animation
      out:
      - animation
    step_2stac2:
      run: 'https://pipe-drive.inesctec.pt/application-packages/tools/2stac2/2stac2_openoil_pipeline_0_3_1.cwl#2stac2_openoil_pipeline'
      in:
        animation: step_animation/animation
        simulation: step_simulation/simulation
        metadata: step_simulation/metadata
      out:
      - stac_result
    # step_2s3:
    #   run: 'https://pipe-drive.inesctec.pt/application-packages/tools/2s3/2s3_0_1_0.cwl#2s3'
    #   when: $(inputs.endpoint != null && inputs.endpoint != "")
    #   in:
    #     region: region
    #     endpoint: endpoint
    #     access_key: access_key
    #     secret_key: secret_key
    #     session_token: session_token
    #     bucket: bucket
    #     directory: step_2stac2/stac_result
    #     base_path: base_path
    #   out:
    #     - base_path
  outputs:
  - id: wf_outputs
    outputSource:
    - step_2stac2/stac_result
    type:
      Directory

  hints:
    "cwltool:Secrets":
      secrets: [access_key,secret_key,session_token,password]
  requirements:
    InlineJavascriptRequirement: {}

  s:name: openoil_pipeline
  s:description: |
    This pipeline runs an oil spill simulation with openoil, creates an animation of the simulation and stores it in S3.

    The animation step is optional:
        - If the input animation is set to false, the animation step is skipped.
        - The default value is true (run the animation step).

    The step of saving the results to S3 is optional:
        - if the input endpoint is not set, the S3 step is skipped.

  s:keywords:
    - oil spill
    - openoil
    - opendrift
    - animation
  s:softwareVersion: 0.2.0
  s:producer:
    class: s:Organization
    s:name: INESCTEC
    s:url: https://inesctec.pt
    s:address:
        class: s:PostalAddress
        s:addressCountry: PT
  s:sourceOrganization:
    - class: s:Organization
      s:name: INESCTEC
      s:url: https://inesctec.pt
      s:address:
          class: s:PostalAddress
          s:addressCountry: PT
  s:author:
    - class: s:Person
      s:name: Miguel Correia
      s:email: miguel.r.correia@inesctec.pt
  s:codeRepository: https://pipe-drive.inesctec.pt/application-packages/workflows/openoil-duth/openoil_duth_REF_0_2_0.cwl
  s:dateCreated: "2025-06-10T23:18:07Z"