$graph:

- class: Workflow
  doc: Bathymetry
  id: "urn:bathymetry"
  requirements:
  - class: ScatterFeatureRequirement
  inputs:
    lon_min:
      type: float
      label: Minimum Longitude
      doc: The minimum longitude of the study area
    lon_max:
      type: float
      label: Maximum Longitude
      doc: The maximum longitude of the study area
    lat_min:
      type: float
      label: Minimum Latitude
      doc: The minimum latitude of the study area
    lat_max:
      type: float
      label: Maximum Latitude
      doc: The maximum latitude of the study area
  label: lable inputs
  outputs:
  - id: result
    outputSource:
    - step_1/result
    type:
      File
  - id: metadata
    outputSource:
    - step_1/metadata
    type:
      File

  steps:
    step_1:
      in:
        lon_min: lon_min
        lon_max: lon_max
        lat_min: lat_min
        lat_max: lat_max
      out:
      - result
      - metadata
      run: '#clt'
      # scatter: [lon_min, lon_max, lat_min, lat_max]
      # scatterMethod: flat_crossproduct

  s:name: Bathymetry for given bounding box
  s:description: Get bathymetry to a given bounding box. You can define an outside source.
  s:keywords:
    - bathymetry
    - bounding box
  s:softwareVersion: 1.0.0
  s:programmingLanguage: python
  s:sourceOrganization:
    - class: s:Organization
      s:name: INESCTEC
      s:url: https://inesctec.pt
  s:author:
    - class: s:Person
      s:email: kspanoudaki@gmail.com
      s:name: Katerina Spanoudaki
  s:contributor:
    - class: s:Person
      # s:id: http://orcid.org/0000-0002-7681-6415
      s:email: miguel.r.correia@inesctec.pt
      s:name: Miguel Correia
  s:mantainer:
    - class: s:Person
      s:email: andre.tse@inesctec.pt
      s:name: Andre Tse
  s:codeRepository: https://pipe-drive.inesctec.pt/cwl/bathymetry.cwl
  s:dateCreated: "2023-03-30"
  s:license: https://opensource.org/licenses/MIT
  s:citation: D5.1 Analytics Service Layer Definition and Operations Report v1 #Just an example
  s:temporalCoverage: "2023-01-01T00:00:00Z/2023-12-31T23:59:59Z" #Dummy date
  #s:spatialCoverage: "Portugal" #Dummy spatial coverage
  # s:softwareRequirements:
  #   - class: s:SoftwareApplication
  #     s:name: netCDF library
  #     s:version: "4.7.4"


- baseCommand: bathymetry
  class: CommandLineTool

  id: clt

  arguments:
  - --lon_min
  - valueFrom: $( inputs.lon_min )
  - --lon_max
  - valueFrom: $( inputs.lon_max )
  - --lat_min
  - valueFrom: $( inputs.lat_min )
  - --lat_max
  - valueFrom: $( inputs.lat_max )

  inputs:
    lon_min:
      type: float
      s:description: The minimum longitude of the study area.
      s:name: Input lon_min float
      s:keywords:
        - lon_min
        - float
      s:exampleOfWork:
        - https://example.com/output_file_example_1 # or any other type
    lon_max:
      type: float
    lat_min:
      type: float
    lat_max:
      type: float

  outputs:
    result:
      format: ogc:netcdf
      type: File
      outputBinding:
        glob: "result/out.nc"
      doc: |
        The output NetCDF file generated by the bathymetry model.
        The file is in the OGC NetCDF media type.
      s:name: Result NetCDF File
      s:description: The output NetCDF file generated by the bathymetry model.
      s:keywords:
        - file
        - output
        - netcdf
        - cf 1.4
      s:fileFormat: "application/x-netcdf; format=CF-1.4"
    metadata:
      type: File
      outputBinding:
        glob: "result/metadata.json"
      doc: |
        metadata description

  requirements:
    NetworkAccess:
        networkAccess: true
    EnvVarRequirement:
      envDef:
        PATH: /srv/conda/envs/model-env/bin:/srv/conda/bin:/srv/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
        # GEBCO_URL: https://pipe-drive.inesctec.pt/inputs/GEBCO_2014_1D.nc
    ResourceRequirement: {}
    InlineJavascriptRequirement: {}
    DockerRequirement:
      dockerPull: iliad-repository.inesctec.pt/bathymetry:1.0.9

  s:name: Bathymetry for given bounding box
  s:description: Get bathymetry to a given bounding box. You can define an outside source.
  s:keywords:
    - bathymetry
    - bounding box
  s:softwareVersion: 1.0.0
  s:programmingLanguage: python
  s:sourceOrganization:
    - class: s:Organization
      s:name: INESCTEC
      s:url: https://inesctec.pt
  s:author:
    - class: s:Person
      s:email: kspanoudaki@gmail.com
      s:name: Katerina Spanoudaki
  s:contributor:
    - class: s:Person
      # s:id: http://orcid.org/0000-0002-7681-6415
      s:email: miguel.r.correia@inesctec.pt
      s:name: Miguel Correia
  s:mantainer:
    - class: s:Person
      s:email: andre.tse@inesctec.pt
      s:name: Andre Tse
  s:codeRepository: https://pipe-drive.inesctec.pt/cwl/bathymetry.cwl
  s:dateCreated: "2023-03-30"
  s:license: https://opensource.org/licenses/MIT
  s:citation: D5.1 Analytics Service Layer Definition and Operations Report v1 #Just an example
  s:temporalCoverage: "2023-01-01T00:00:00Z/2023-12-31T23:59:59Z" #Dummy date
  #s:spatialCoverage: "Portugal" #Dummy spatial coverage
  # s:softwareRequirements:
  #   - class: s:SoftwareApplication
  #     s:name: netCDF library
  #     s:version: "4.7.4"

cwlVersion: v1.2

$namespaces:
  s: https://schema.org/
  ogc: http://www.opengis.net/def/media-type/ogc/1.0/
schemas:
- http://schema.org/version/9.0/schemaorg-current-http.rdf